rs29592377 SNP Detail

Summary

• ID
  rs29592377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50622474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTCTATCG GGGAGCAGAG AAAGGTCTGA AGATATATCA
  GGCCCAGAGC ATGTTCCAAA ATCCCTAGCT TTAGGTTGAC ACGCAGGGAT AAGCTGACCT
  M
  TGACTTGTTC AACACTGCAG ACACAGACAG AGACCAGTGT TCCCAGGTTG TCACTCCCAC
  CTCCTGTGCT CTGCATATCG AGGCTGAGTC CAGGTCCCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46320255	mCV25205614	ABI	CRAMUS_MOUSE	f	SNP		C	A					C		A
ss47707842	NES11324126	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	A	A		C	A	C	C		C	A	A	C		C
ss136479874	ENSMUSSNP2054912	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
ss322959765	CHEV_9_50519279	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29592377					SNP	C	C	A	C	A	A	A	C	C	A	C	C	A	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47707842	NES11324126	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50622474 () rs orientation: forward

Symbol	Name	Function Class
Dixdc1	DIX domain containing 1	within coordinates
Gm39337	predicted gene, 39337	within coordinates