rs29592871 SNP Detail

Summary

• ID
  rs29592871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107845414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTAGGTG AGCGAGGGCT
  TCTGGGTCAG ACTACAACAC CTCCACATGA AAAACCTCCT GTGGCCCATT CTATGTTTTC
  TCAGGAAGCA TGGTTATTTC CAGAGTCCTT ACGCCAAACA CTGGCACAAG CATCTCCAAA
  AGCAGATGTT CACAATTTCC CAAACGTTAA CTTGCCAGAC ACTGCCAGAT GTATCAACAC
  R
  GCCAGAATCT CCCCTCGATG AGCTGATGAT TGAGTTTTTT GAAAATTCCT ACAACGCAAT
  CACCGACAGT AGGGAATGCT TATAGTAAAC CATCTTGAAA AGAGAGAAAG ATGGCTTCCA
  GGTGAGGGTA GATGTAAAAC CTGGTGACTG TTCACCCTCT GCCCATCAGC CTAGCACCTC
  TCGGAAGCAA GACTCACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46860471	NES10716481	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29592871					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46860471	NES10716481	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107845414 () rs orientation: forward

Symbol	Name	Function Class
Gstm6	glutathione S-transferase, mu 6	749 bp downstream
Rr583091	regulatory region 583091	1341 bp proximal