rs29593681 SNP Detail

Summary

• ID
  rs29593681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50968947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAGTCAC AAGACATGTC
  ATCAGGCATA GCTTCCCCAG AACACACCCG GAAGGAGATG TTCTTCAGGT CTGGCCGGGG
  CTCAGCTAAA TCAGCTTCAC TTTGTTTTCT GATGACATTG TAAACATCTA GGTTGGGGCT
  GTTTTCTTGG CGAGGAGTGG GCCAAATGGT GTGCTGCTCC TTTGTGCTAG GGTCTGTCTG
  Y
  TCTCGTTTTC TAAAAGAAGA GAACCAGGCT GAGTATTTGA GACCAGGGTC CTGAGAATGT
  CCCTGTTCTA TTGAAGTGGA TGAAGTGACC TCAGGAAGTC ACCTTGCTCT GTTTCTCACC
  TACCTACACC AACAGGCTTT GTGAGTCAGG TAGGAGACAC CCCAGGAAAC TGTTCTATTC
  TGGTCTTCCT ACACCTACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46322805	mCV24072370	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss136485318	ENSMUSSNP4006798	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29593681					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50968947 () rs orientation: forward

Symbol	Name	Function Class
Gm32681	predicted gene, 32681	within coordinates
Layn	layilin	within coordinates
Tssr89523	transcription start site region 89523	1187 bp upstream
Tssr89524	transcription start site region 89524	944 bp upstream
Tssr89525	transcription start site region 89525	651 bp upstream
Tssr89526	transcription start site region 89526	618 bp upstream
Tssr89527	transcription start site region 89527	562 bp upstream