rs29593738 SNP Detail

Summary

• ID
  rs29593738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44478343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGAGACA GTACCCAGGG
  CTAGGAGCCA GAGACACAGA GAACTTAAAT TCAAGGCTGG TCTGACCCTG TCTGAAAACA
  AAACAAAACA ACAAAGAAAC AAAAACCCTG AAAAGTAAAA TAAAACGAAA GCCACAGAGC
  CCTGGATTTA AGAATATTAA CACAGCTGGC CATGGTGGTG CACACCTTTA ATCCCAGCAC
  Y
  AGGGAGACCA AGGCAGGTGG ATCTCTATGA GTTCAAGGCC AACCTAGTCT ATGTAGTAAG
  TTTCAGGACA GTCAGGACTA TGTAGAAAGA CCCCATCCTA ATTAATTAAT TAAAAAGTTG
  AAGGAAGGGA AATTCTCTGA ATATTTAGTG TGTTAAAGTT ATACTTTTGC TTTTGTTCTT
  CTGGTGACAA GCGCGTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss46322120	mCV24742070	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136397299	ENSMUSSNP5249180	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs29593738					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44478343 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	1543 bp distal
Rr206319	regulatory region 206319	1142 bp distal
Tssr2844	transcription start site region 2844	739 bp downstream
Tssr89174	transcription start site region 89174	668 bp downstream
Tssr89175	transcription start site region 89175	717 bp downstream
Tssr89176	transcription start site region 89176	1063 bp downstream