ACCTCCCTCT CCCTCCCCCC AACCCCCAAT CCCTGTTACC CTCTCTTCCA AGGTGCTCTA GCCAAGGATA TTAACAAAGA GGCAGGAGCT GAGCTAGGCA GGCCCTTCCT CTGCAGATTC TGGGACTTGC TGTGGCTGTC AGGCTTCTCT ACTGTTGTGA TTGTTTTTGT TTTTGTTTTC TTCCTTCATG GAACTGGATC R CTGCTCTGGT GTCATTTGCT TCATTGCATT GCAAGAAAAT GATGTCATAC TGTGGGGCCC TGGTCCATTT CCCAGCTTCT AACCTAAGTC TCCTGACCTT TCTCATCTGC CTGCTCTTGG AGAAAATGAA ACACATTGAA GCATACAGGT CAGCAAACCT CAGGAAGGCC TCTGCGCCTC CAGGATGGGC AGGAACGTTA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46861942 | NES10856379 | PERLEGEN | MM_PANEL2 | f | SNP | G | A | A | G | G | A | A | G | G | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs29593824 | SNP | G | A | A | G | G | A | A | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46861942 | NES10856379 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:27917046 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm56777 | predicted gene, 56777 | within coordinates | ||||||
Rr574493 | regulatory region 574493 | 931 bp distal | ||||||
Rr574494 | regulatory region 574494 | within coordinates | ||||||
Rr574495 | regulatory region 574495 | 591 bp proximal | ||||||
Tssr32860 | transcription start site region 32860 | 559 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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