rs29593827 SNP Detail

Summary

• ID
  rs29593827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27917281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATGATG TCATACTGTG
  GGGCCCTGGT CCATTTCCCA GCTTCTAACC TAAGTCTCCT GACCTTTCTC ATCTGCCTGC
  TCTTGGAGAA AATGAAACAC ATTGAAGCAT ACAGGTCAGC AAACCTCAGG AAGGCCTCTG
  CGCCTCCAGG ATGGGCAGGA ACGTTAATGA CCCCCACACA GCCTTATCTG GTTGTCACAT
  R
  GCAAGGACCC CCTGCCTGAA AAATGGGGGA AGGAATGGCT TCGGGTTGTG CTTGCAGTTT
  CCTGGCAGAA GCCTTTCTTC CCTTACGGTG GCTTTAATTA CTAGTGTCGG TGTTCAGTGT
  AATTCTGGCT CCTCCCATGG TTTCTGCTCT TTGTACTAAA GTCTGTCCGA AAACTTAAAT
  CTTACACGCT GCACTTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45526634	mCV24246999	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss46861945	NES10856383	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29593827					SNP	G	G	A	A	G	G	A	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861945	NES10856383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27917281 () rs orientation: forward

Symbol	Name	Function Class
Gm56777	predicted gene, 56777	within coordinates
Rr574493	regulatory region 574493	1166 bp distal
Rr574494	regulatory region 574494	within coordinates
Rr574495	regulatory region 574495	356 bp proximal
Tssr32860	transcription start site region 32860	324 bp downstream