rs29594558 SNP Detail

Summary

• ID
  rs29594558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107883572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATCATCT GCACCTGTGA
  ACATTTATTA GTGACATGAT TGTGAGAAAA ATACCTGATA TAGACAACAT GTGAAAAGGG
  AGGGTTTTAA AAGATATGTT GCATGACTGT GCCTGTTTTG TTGTTGTTGT TGTTTGTTTG
  TTTGTTTGTT TGTTTGTAGG GGGACTAGGA GAATACTTGT GACAATCAGA GAGTAACTTG
  Y
  AGGAGTCCCA GGTACTGACC TTAAGTCATC AGGCTTGGAA GCAAGTGCCT TTATCCGCTG
  AACCACATTA CTGAGCACAT GAGAGCAATT TTGGTTCATG GATCCAGAGG GGTTTCAGCT
  CATCTTTTCA GGGAAGATAG GGTAGCAAGA GCAGTTCTCT TCCTTATACC CCGTGCCTGG
  AGAGCAATGG CCACCCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46860876	NES10714771	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29594558					SNP	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46860876	NES10714771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107883572 () rs orientation: forward

Symbol	Name	Function Class
Gm66772	predicted gene, 66772	within coordinates
Rr583102	regulatory region 583102	1434 bp proximal