rs29594754 SNP Detail

Summary

• ID
  rs29594754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:18637554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATCTGTG GCTCCCTCAA
  ATGACTCTCC AAGTTCTATT CTGGAACTCT TGCTTTCTTC CTAAGTGCCA AGCGAGGATA
  TCCTCACAGT GATGAAAGTC TACTCCAAGT GGGTAAACAT TCCTATATTT CATCAATATA
  ATTTCATCCT TTCCTGGAGC TTATTAGTGA CAGCTCAAGC AAAGCTTTTT TTATGCTACA
  Y
  CAGATGGTTT TCTCTTTTCC TAAAAGTTGC AACCCTACAA TCTATTATAC ATGGATGTTC
  AAACAACATC ATCTTGCATC TTTTCTGTTT AAACTTTTTA TTTTGAGATA CTTTCAGATG
  TACATACAAT TGTAAAGAAA ATACTACAGT AAGAACTGTG CATTCTTTGT TCATGTTCAA
  CCACTGGAAG CATTTTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46861952	NES10965272	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29594754					SNP	C	C	C	C	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861952	NES10965272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:18637554 () rs orientation: forward

Symbol	Name	Function Class
Rr7161	regulatory region 7161	575 bp distal
Rr394804	regulatory region 394804	within coordinates