rs29595094 SNP Detail

Summary

• ID
  rs29595094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40714037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG CAATTCATTG TTTTTTAGAC
  Y
  GTTACCAACG CTGTGGTCAC AGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	SM/J
ss46320767	mCV23403490	ABI	CRAMUS_MOUSE	f	SNP	T			C	T
ss52005325	NES15019002	PERLEGEN	MM_PANEL2	f	SNP	T	T	T		T		C
ss136338437	ENSMUSSNP3583179	ENSEMBL	ENSEMBL_Sanger	f	SNP	T				T
ss322919710	CHEV_9_40610824	CHEVERUD	SCREENING_POP	f	SNP						T		T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	SM/J
rs29595094					SNP	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005325	NES15019002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40714037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21603	CpG island 21603	850 bp distal
Gm57042	predicted gene, 57042	1913 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	1192 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	842 bp upstream
Snord14d	small nucleolar RNA, C/D box 14D	1254 bp upstream
Tssr84481	transcription start site region 84481	1457 bp downstream
Tssr84482	transcription start site region 84482	828 bp downstream
Tssr84483	transcription start site region 84483	372 bp downstream
Tssr84484	transcription start site region 84484	85 bp downstream
Tssr84485	transcription start site region 84485	1483 bp upstream
Tssr84486	transcription start site region 84486	1998 bp upstream
Tssr88972	transcription start site region 88972	1955 bp upstream