rs29595698 SNP Detail

Summary

• ID
  rs29595698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27917932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCTGGG GAAAGGCGAC
  TTTTCCCCCC TCTCCCTAAG CCCCATCTTA AATAGTTTCC TTCCCACAGC CCATATGTCC
  ACATTCAAAG TAAGAAACCC AGCCCATTCT CCTGCCCCGG CCCCTGTCCC TAGCTCAGGA
  ATCTCGACAG CCACACAAAA CTGGAAATTG GCTGTTTAAA ACGAAGGTGC CATATTCGTT
  Y
  CAGTCTGTAA ACTAGACATT TTTTGGCACA CAGCGCTGAA GAATTAACCC TTTGATTTCT
  CCCAGACAAG GGCACAGTAA AATGCCTGTT CTTTTCTTTG TGACCAGAAT GGCAAACACC
  AACCTGTTGC AGTTCTTAAC ATCGTGAATG GGGTTCTGGT TAACCTAAGG CATATACGAT
  TGTGCTATTT CACATAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46861966	NES10856398	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29595698					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861966	NES10856398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27917932 () rs orientation: forward

Symbol	Name	Function Class
Gm56777	predicted gene, 56777	285 bp upstream
Rr574493	regulatory region 574493	1817 bp distal
Rr574494	regulatory region 574494	296 bp distal
Rr574495	regulatory region 574495	within coordinates
Tssr32860	transcription start site region 32860	312 bp upstream