rs29596092 SNP Detail

Summary

• ID
  rs29596092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108106177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTACATCC TGAGCTGCCC
  ACATGGTCCA GAGCTAAGAG GGTATCGGCA ACATCAATCT GTCAGACACC AATGTTAAAG
  ATAAGGGACC TTCAGATGTC AGAAACTGAG GTCCTAAGAT ATGGAACTTG TCTAAGGTTG
  ATTGTACAGC ACTGCCTGAG AGGTTACGGG CTCTCGATAG CACTGCCTTC TCAATAGGGA
  Y
  CCCAGCATCT GTGGCTGTCA TTCATAACCT AGGAGAACTC TTCATCAGGC ACACAAGAAA
  TCACCACCAT CACCATCACC ATCACCATTA CCACCACCTA ATACTTCTGT CTCCCACCAA
  GAGTGAGGTT TCAGGTTCTC CCAAACCTTC CACTTGTACC CAGTAGGGCA TCTCCCCCTT
  TGAGCCCACT GTATCATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46862550	NES10705537	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29596092					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46862550	NES10705537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108106177 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13693	CpG island 13693			1598 bp proximal
Cyb561d1	cytochrome b-561 domain containing 1			mRNA-UTR
				Noncoding-Transcript-Variant
Gm56801	predicted gene, 56801			1031 bp upstream
Rr583166	regulatory region 583166			925 bp distal
Rr583167	regulatory region 583167			1803 bp distal
Rr583168	regulatory region 583168			1649 bp distal
Rr583169	regulatory region 583169			1463 bp distal
Rr583170	regulatory region 583170			1116 bp proximal
Rr583171	regulatory region 583171			1724 bp proximal
Tssr1019	transcription start site region 1019			1055 bp upstream
Tssr31237	transcription start site region 31237			1738 bp upstream
Tssr35130	transcription start site region 35130			1554 bp downstream
Tssr35131	transcription start site region 35131			1946 bp downstream