rs29596186 SNP Detail

Summary

• ID
  rs29596186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107848323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCGTGACA GCTAATTCTA
  CCCAGGTTGC CTGCGTGTGG CAATGACAAA TTGACTCCGC AGATCTAGAA GGCTGAACAT
  GGGTCCTGGC AGAAAGTCAG TGCTCAATAG ATCAGAACTA GGGAAGCAAC CTGGAAAGGG
  GGAAGGGAAG TAGGGCATCC AAGAGGAAGC AGGACCAGGG CATCACCTCA AAGCGGGCCA
  Y
  GAAGTCCTTC AGGTTTGGGA AGGCGTCCAG GCACGTGGGT TCAAACATTC GATGCTGATC
  AAGGACATCA TAGACGAGGA AGTCTGCAAA GGTGATCTGC AGGAAGTGAG GCTCAGTGAG
  GTGGGATCCG GATGCCTGGG AAGAATGGCA GCTCCTCCTG CCCACCTGCT ACCCTCTCTA
  CCTTGTCCCC TGCAAACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss46860498	NES10716285	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs29596186					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46860498	NES10716285	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107848323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gstm6	glutathione S-transferase, mu 6			Coding-NonSynonymous
				mRNA-UTR
Rr583091	regulatory region 583091			1132 bp distal