rs29596606 SNP Detail

Summary

• ID
  rs29596606
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65200047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAAAAA ATATTTTTAG
  AACTGGAGAT ATGACTCAGC ATTTAAGAGC ACGTTGCTCT TGCAGAGGTA CCAGGTTCCC
  ATCACCCACA TGGTGATTCA CAGCCATGAT TAACCCTAGG TCCAGGGGAT TCAACAGGCA
  CACTTGTGAT GCACTCACAT TCATGCAGGC AAAATGTTCC TATGCATGAA GCAAAGATTT
  W
  TAAAAAATGT GTGTGAAGCC GGGAGTGGTG GAACACGCCT TTAATCCCAG CACTTGGGAG
  GCAGAGGCAG GCGGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAGAGTG AGTTCTAGGA
  CAGCCAGGGC TACACAGAGA AACCCTGTCT CGAAAAAACA AAAACAAAAA AACCCATAAC
  TTCTCTTTTT GGGCGGGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46322150	mCV23534738	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss136566850	ENSMUSSNP1236062	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss322986414	CHEV_9_65140572	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29596606					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65200047 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	1495 bp upstream
Cpgi21943	CpG island 21943	1230 bp proximal
Rr201316	regulatory region 201316	1847 bp distal
Rr206623	regulatory region 206623	153 bp proximal
Rr368805	regulatory region 368805	1214 bp upstream
Tssr85679	transcription start site region 85679	1392 bp upstream
Tssr85680	transcription start site region 85680	1414 bp upstream
Tssr85681	transcription start site region 85681	1510 bp upstream
Tssr85682	transcription start site region 85682	1605 bp upstream
Tssr85683	transcription start site region 85683	1630 bp upstream
Tssr85684	transcription start site region 85684	1662 bp upstream
Tssr85685	transcription start site region 85685	1675 bp upstream
Tssr85686	transcription start site region 85686	1792 bp upstream