rs29596670 SNP Detail

Summary

• ID
  rs29596670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27918105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG GTTCTGGTTA ACCTAAGGCA
  Y
  ATACGATTGT GCTATTTCAC ATAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45501108	mCV24247006	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T
ss46861978	NES10856412	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T	T		C	T	C		C
ss134708212	ENSMUSSNP6684083	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320689457	CHEV_3_27762878	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29596670					SNP	C	C	T	T	T	C	T	T	T	T	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861978	NES10856412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27918105 () rs orientation: forward

Symbol	Name	Function Class
Gm56777	predicted gene, 56777	458 bp upstream
Rr574493	regulatory region 574493	1990 bp distal
Rr574494	regulatory region 574494	469 bp distal
Rr574495	regulatory region 574495	within coordinates
Tssr32860	transcription start site region 32860	485 bp upstream