rs29596877 SNP Detail

Summary

• ID
  rs29596877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48214280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT TTTTATACCT TTGTAAGGGC
  Y
  AGATATAGGC ACCAGGGTAG TTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46323120	mCV22888942	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss136451403	ENSMUSSNP998751	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C		T
ss322953078	CHEV_9_48111063	CHEVERUD	SCREENING_POP	f	SNP						C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29596877					SNP	C	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48214280 () rs orientation: forward

Symbol	Name	Function Class
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr195312	regulatory region 195312	721 bp proximal
Rr209369	regulatory region 209369	322 bp proximal
Rr383325	regulatory region 383325	within coordinates