rs29597185 SNP Detail

Summary

• ID
  rs29597185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54510604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGCAAC ACTATAATTT
  ATATGGGGTG GTTAAGGCAT TAATGGACTA CATTACTACA TATCCACTAT ATTCAAATTA
  ACATAACCAT CATAGATTGA TGCACCTTCA AAACACCATT CCCAAAAGCC ACAAGTTGAA
  AATGACAGTA ATGCCTGAGC AACCTAAAAT CCGTATCTAC AACTTTCAGC TCTACTAGAA
  R
  CTTAGACAGA CATCTCTCAC CACTAAAAAT AGTTAAGATT TGAAAAACAA ATTGATATTA
  CTACTGTCTT AGTATTTCCA GTGTATGTAG GCATACCTAC AGCAGGGTGC AGACCAGCAG
  GTGATGACCA GTATCTTCCA CAGCGTTCCT CCACATGATT TTTATTTTAT TATGCAATTT
  TTAAAAAAAA GTTTATTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47361268	NES11081787	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29597185					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47361268	NES11081787	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54510604 () rs orientation: forward

Symbol	Name	Function Class
Pgap1	post-GPI attachment to proteins 1	1555 bp downstream