AGGGCTGGGT ACAATGGTAG TCCCAGGCAC AGGTACCAGG CTGTACCTTT GATCTGGGCC TGGAACCACA CTGAGTACAT GCCCAAGAGC ACCGTTACTG TAGCCATCAG GTAGACAACC AGGCCACACG TCAGATGGTA GAGCTTGAGG CGAGCCACCC TTGAGACCCG GGCTGCTCGT GGACAGAGGA GGCAGAGCCC R CACAGTGCCT GTCCTCCAGT GGCCAACAGT GTCAAGGCTC CTATCCAGCT GTGCCAGGAC ACCAAATGGG ACATCTCACT TCGGATCTTG CTGGAAATGA TGAAGCCCAA GCCTAGGACA GCACAGAGGA TGGCCATGGT CTGCCCTGCC CAGTGGAGTC GAATCCGGGT TTTTCGAGAG CAGAAGAAGA ACAGGGAGTG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46862562 | NES10705541 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | G | A | G | G | A |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs29598094 | SNP | A | A | A | A | A | A | G | A | A | A | G | A | G | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46862562 | NES10705541 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:108106786 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13693 | CpG island 13693 | 989 bp proximal | ||||||
Cyb561d1 | cytochrome b-561 domain containing 1 | Coding-Synonymous | ||||||
Noncoding-Transcript-Variant | ||||||||
Gm56801 | predicted gene, 56801 | 422 bp upstream | ||||||
Rr583166 | regulatory region 583166 | 1534 bp distal | ||||||
Rr583170 | regulatory region 583170 | 507 bp proximal | ||||||
Rr583171 | regulatory region 583171 | 1115 bp proximal | ||||||
Rr583172 | regulatory region 583172 | 1436 bp proximal | ||||||
Tssr1019 | transcription start site region 1019 | 446 bp upstream | ||||||
Tssr31237 | transcription start site region 31237 | 1129 bp upstream | ||||||
Tssr35130 | transcription start site region 35130 | 945 bp downstream | ||||||
Tssr35131 | transcription start site region 35131 | 1337 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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