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rs29598094 SNP Detail
Summary
  • ID
    rs29598094
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:108106786 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGGCTGGGT ACAATGGTAG
    TCCCAGGCAC AGGTACCAGG CTGTACCTTT GATCTGGGCC TGGAACCACA CTGAGTACAT
    GCCCAAGAGC ACCGTTACTG TAGCCATCAG GTAGACAACC AGGCCACACG TCAGATGGTA
    GAGCTTGAGG CGAGCCACCC TTGAGACCCG GGCTGCTCGT GGACAGAGGA GGCAGAGCCC
    R
    CACAGTGCCT GTCCTCCAGT GGCCAACAGT GTCAAGGCTC CTATCCAGCT GTGCCAGGAC
    ACCAAATGGG ACATCTCACT TCGGATCTTG CTGGAAATGA TGAAGCCCAA GCCTAGGACA
    GCACAGAGGA TGGCCATGGT CTGCCCTGCC CAGTGGAGTC GAATCCGGGT TTTTCGAGAG
    CAGAAGAAGA ACAGGGAGTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46862562 NES10705541 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G A G G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs29598094 SNP A A A A A A G A A A G A G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46862562 NES10705541 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:108106786 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13693 CpG island 13693 989 bp proximal
Cyb561d1 cytochrome b-561 domain containing 1 Coding-Synonymous
Noncoding-Transcript-Variant
Gm56801 predicted gene, 56801 422 bp upstream
Rr583166 regulatory region 583166 1534 bp distal
Rr583170 regulatory region 583170 507 bp proximal
Rr583171 regulatory region 583171 1115 bp proximal
Rr583172 regulatory region 583172 1436 bp proximal
Tssr1019 transcription start site region 1019 446 bp upstream
Tssr31237 transcription start site region 31237 1129 bp upstream
Tssr35130 transcription start site region 35130 945 bp downstream
Tssr35131 transcription start site region 35131 1337 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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