rs29598103 SNP Detail

Summary

• ID
  rs29598103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108107889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCCTGC CCAGGACCCT
  CTAACGCTTT TCCATGTAGG GCCTCCTAAG GAAGTATCAG TTCTGTCTTT TCAAGCCCCA
  CCCTCCCTGG ACTTCCGGGA ACCCGCCTAC TACGCTTTTA CAACCACTCC CGGACCCGCC
  CCTCCTCAGC TGAGGGTCCA GGTTTCCAGT CTCCCAGTGC GCCCAAAGCG GCCCCTCCAG
  Y
  GCCTAGGCTC CGCCCCTTCT TTGGCCCCGC CCCACCTCGC CTCGCACACT CACTGGTTCC
  GGGCCGGGAC AGCACAGTCA GAAAGATGGT GAAGCCCAAA GCTATCAGGT GCGCCAAGAT
  CCCACTGCCT CTCCGCAGCC AGCGGGTCAG TCTCGGCTCC CTCGCTGGAG CGGGAACCAG
  ACCTACCTCC ATGGAATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46862571	NES10705546	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29598103					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46862571	NES10705546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108107889 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atxn7l2	ataxin 7-like 2			1649 bp downstream
Cpgi13693	CpG island 13693			within coordinates
Cyb561d1	cytochrome b-561 domain containing 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm56801	predicted gene, 56801			within coordinates
Rr583170	regulatory region 583170			within coordinates
Rr583171	regulatory region 583171			12 bp proximal
Rr583172	regulatory region 583172			333 bp proximal
Rr583173	regulatory region 583173			1950 bp proximal
Tssr1019	transcription start site region 1019			647 bp downstream
Tssr31237	transcription start site region 31237			26 bp upstream
Tssr35130	transcription start site region 35130			128 bp upstream
Tssr35131	transcription start site region 35131			234 bp downstream