rs29598117 SNP Detail

Summary

• ID
  rs29598117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57959796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCATT ATTTCCCAAA
  GGCCTAGTAA TTAATTCTCT TTCTCCTTTC TCACTCTTCT CTCCCCATTC TCTTCTCCCA
  CTCTGTGTGC CCCCCTCTAT CCTTCCTTCC CTCAATCTTC CTTTTCTTCT CTCTCTGATT
  CCCTGTCTGT CACTGTGTGT CTCTCCCCTT CCTTCTCTCG GTGTCTCTCT TCCTCTCCCC
  Y
  CTTCTCTTTC TGTATGTGCC TGATGTGTGA ACATGCATAT GTAATTGAGT ACTTGTCTGA
  TGTGTGTATG TATGTATGTA TGTATGTATG TATGTGTTGT GTGTGTGTGT GTGTGCTTGA
  ACGCGCGTGT GTGCCACATG AACTGAGGAA GCAAAGGCAG ACTCAGGAAA GAGAAGAAGC
  TGTTGAGGTC TCAGCTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46321673	mCV23503853	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss322972690	CHEV_9_57900320	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29598117					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57959796 () rs orientation: forward

Symbol	Name	Function Class
Ccdc33	coiled-coil domain containing 33	within coordinates
Rr679845	regulatory region 679845	251 bp distal
Rr679846	regulatory region 679846	378 bp distal
Rr679847	regulatory region 679847	645 bp proximal
Rr679848	regulatory region 679848	743 bp proximal
Rr679849	regulatory region 679849	1572 bp proximal