rs29598149 SNP Detail

Summary

• ID
  rs29598149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27914718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCACCT GCCAAGTCCC
  ACAATGCTTT TCACCTGCCA AGTCCCACAA TGCGTTTCAC CTGCTAAGTA CCACAATGCT
  TTTCACCTGC CAAGTCCCAC AATGCATTTC ACCTGCCAAG TCCCACAATG CTTTTTCACT
  GCTTTAACAC TGTGAGCTTT AGAAGTTTGA AGGAATTGAT ACTATAACTG TAGAAGACAC
  Y
  GTAAAGATCT ACCTGTGAGG GAGAATCCTC TCTTCATGGG ATGCCAAAGG AGCAATGGGA
  GTCTTGTTTA TAAGAAGGTT TATAGAAGAG AAAATCGGGG GAGGGGGATT GTTTGAGCTT
  CTACAAACTG GAGATGGGTG GAGTGTTCAG AACAAAGCAG GGGTCATCCT GGAAAAATAC
  TGGCAGCTTT GATCTTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46861897	NES10856577	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29598149					SNP	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861897	NES10856577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27914718 () rs orientation: forward

Symbol	Name	Function Class
Rr574492	regulatory region 574492	748 bp distal
Rr574493	regulatory region 574493	983 bp proximal
Rr574494	regulatory region 574494	1901 bp proximal