rs29598239 SNP Detail

Summary

• ID
  rs29598239
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54511940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCAAACT TCAGAAAAAC
  CTGTTAACTA GAACCCAAGG CCTCTCCTCT CCTCCCAAAA GCCACTACTC TGATTAACTG
  CAAAGTAACC TATACATTTG CATACAATCC CTAAATTGCT TTTCATTCTT TCTGTGCTAG
  AACCTGATCA CCTAGGATGA TATCCAGTTA GCACATGAAA AAAGAGAAAG TCAGTCTCCG
  S
  AAGAGTCCTG AAAACAGACT ATGAACCATG TGGTGTCCAC AGAGATGGAT GGGGAAACTA
  CAACATGTCA AGCTGTGAAT GTCAGCTTTT CCTGGTGCCT AGGGTGCTCT GTGTTCACAC
  ACTGCTTTCA CTGAAGGGCC AGGTAAAGAA GACGCATGTA ACACTTTCTT TTCTGAGACA
  GCATTGCAGA GTATGAAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47361283	NES11081665	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29598239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47361283	NES11081665	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54511940 () rs orientation: forward

Symbol	Name	Function Class
Pgap1	post-GPI attachment to proteins 1	219 bp downstream