rs29598304 SNP Detail

Summary

• ID
  rs29598304
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107885221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC AGGCACTGTG TTGAGATAGG
  W
  GGGCCCTGAT AACAGTGCTC ACTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46860912	NES10714566	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	A	A	A		T	A	A		A
ss320866199	CHEV_3_107780823	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29598304					SNP	A	A	A	T	A	A	A	A	A	A	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46860912	NES10714566	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107885221 () rs orientation: forward

Symbol	Name	Function Class
Gm12497	predicted pseudogene 12497	1727 bp upstream
Gm66772	predicted gene, 66772	within coordinates
Rr583102	regulatory region 583102	within coordinates
Tssr31229	transcription start site region 31229	1695 bp upstream