rs29598310 SNP Detail

Summary

• ID
  rs29598310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107885366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTGGGA ACTGGAGGTC
  CACTCTGGGA AGGACAGGCA CTGTGTTGAG ATAGGAGGGC CCTGATAACA GTGCTCACTT
  GATACAGGGG TTTGCAAGGT CAGTGATACC AACACGAGGA GTGGCCTGGA TTGTAAGTGG
  CTGCAAGGAG TTCAAACAGG AAACAGGACC TGCTGGTTCA TCCCAGTTCA AAGCACTGGA
  Y
  GATTCAGAAA GGCTGGAGAA GAGATTCTGG TCACCTGGGT GCAGGTGGCT CTAGTTGGCT
  TCAGAATGTC CAAGATGTGT CTTCTCTTCT GCTCATGTAC ACCACACAGA GTGACACATA
  GTACTTCGTC AAAGCAAGGT CATGAGGGTG GACACTATCC CCCAACTTTT ATCCTAGGCT
  GCTTTCACAC AGAAACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46860918	NES10714568	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29598310					SNP	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46860918	NES10714568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107885366 () rs orientation: forward

Symbol	Name	Function Class
Gm12497	predicted pseudogene 12497	1582 bp upstream
Gm66772	predicted gene, 66772	within coordinates
Rr583102	regulatory region 583102	within coordinates
Tssr31229	transcription start site region 31229	1550 bp upstream