rs29598345 SNP Detail

Summary

• ID
  rs29598345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72712589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTGGCACAA GCTAGAGTCA TTTGGGAGAG GGAAACTTAA TTGGATAAAT GTTCCCGTCA
  TACTTGAATG TGGGCAAGCC TGTGGTTCAT GCTCTTGACT AAGGATTGAT GCAGTGTCTC
  TGTGGGCGGT GCTACTTGTG GGTTTGGTGG TCCTGGATGC TGTATTAAAC AAACAAACCA
  CACACACACA CACACACACA CACTCAGACA CACACACTCA GACACACATA CTCACACACA
  CTCTCACACT CACACACACT CGCACGCACA CACACTCACA CATACACACA CACTCACACA
  Y
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAT TCTCTCTGAC
  CAGCCAGGAA ATGGTACTCC TCAATGATCT CTCCTTCCTG CCTCCAGGTT CCTGCTCTGA
  CTTCCCTCAG TGATGGATTG TTGGCTGTGA GATAAAATAA ACTCTTTGCT CCCAACTTCT
  CTATTAACCT CACAGGTTCA TCATGGGAGG CCAAGGAGTA CATATGAAAA CTTTTGAGCA
  GACCACAAAT GTTATACATG GTCAGAGGAA GTCTCTTCCT GTCCAGTGTA GTGCAGTAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46322360	mCV23625695	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs29598345					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72712589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22020	CpG island 22020	1426 bp proximal
Prtg	protogenin	1967 bp upstream
Rr206710	regulatory region 206710	811 bp proximal
Tssr86048	transcription start site region 86048	1825 bp upstream
Tssr86049	transcription start site region 86049	1852 bp upstream
Tssr86050	transcription start site region 86050	1886 bp upstream
Tssr86051	transcription start site region 86051	1915 bp upstream
Tssr86052	transcription start site region 86052	1994 bp upstream