rs29598408 SNP Detail

Summary

• ID
  rs29598408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44475949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCATCTAG GAATCAAGGA
  CCTAGGGCTG GTGACGCAGG CCTGTTAGCC CAGCTACTTG GGAAAGTTCA AGGCCTACTT
  GGGCTACAAA ACAAATTCTA GGCCAGCCAG GGAAACACAG TGAGTCCTTT CCTCAAACAA
  ACAAACAATA AACAAGTCAA TAAACTTAAG GGGAGCTAGC CGGGGGTGCA GTTCCATGAT
  R
  GAGCACTTGC CTAGAGTTCA GGAGACCCCT TTGTTTCCCA ATAGTAGAGG AAAAGAAGAG
  GAGAAATTGA GGAATATTCT TCAGAGCTAC CACCAAATTC AAATGAATGT ATGAGGAGCG
  AAGATTTAGA CTTTCAAGTT TCCAACTAGA GCCATTTCTA TACTGTTATA GACGCATATG
  CACATGACAC AGCTGGACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46322174	mCV24944445	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				G		G
ss47689064	NES11321842	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G		G	G	G	A	A	G	G	A	G
ss136397257	ENSMUSSNP1367649	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29598408					SNP	A	A	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689064	NES11321842	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44475949 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	652 bp proximal
Rr206319	regulatory region 206319	851 bp proximal