rs29598742 SNP Detail

Summary

• ID
  rs29598742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27790468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACACAT GTGACTTGCA
  AAAAAAAAAA AACACTTGAT ACTTGAAAAG TCTTTCTCTC TAGAAAGAAT AACAAATGTG
  ACAGACATGA GGAGCCCGGG ACAGGGAGTG ACAACATCAA GACACATGAC AGTTTGTAAT
  GCTGGACTGG GAATGTAACT GCTGAAGGAA GGCACAGAGG AAGGCTGCCT ACAGAGAGGA
  Y
  GCTTTTAATC ACTCTGTGGA ATGTGAAGAG CTAACCACCT CAGCAGAACC CACGGGTGGC
  TGGGGGAGGG GAGGGGAGGG GCAGGAGAAG AAAGGAGGCC CAAACTGCCC CAGGCTTCAT
  CTCTTAGGAG AGCAGGGAGG AGAGGATGGT GACCCGTCTC TTCTGGCTGC GCACGCACGC
  TGTGGGTAGA GAGACTTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46861210	NES10863150	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29598742					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861210	NES10863150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27790468 () rs orientation: forward

Symbol	Name	Function Class
Rr574480	regulatory region 574480	within coordinates