rs29598809 SNP Detail

Summary

• ID
  rs29598809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45015721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGACAGAGA GAGGAATAAG
  TGGAGAGTCA GAGGGCACCT ACATGACCAT GGTGAGAACT ATTCTGGGTC CTACCTGGGC
  TAGGTTTCTG GAATGGGAGG AGGTGTTGGG GAGGATACCC ATGGCTCCGG GAGGGAGGCA
  AGAGTGGTGA GGCCTCCTGA AGAGGTTGTT TGTAGAGGGC AGGGTTTTCC CCCAAGCAGT
  W
  GGAAACAGGG AGAACAAACC CTGCTTAGGA CTAAAGTTGC CAGTCAAGAG CACCAGCACC
  ATAGGTAGGA GCCTTCCGCT GTGCCCAGCT CTGGCTAAAC TAGATGTAAT AAAGTATGTT
  AGGTCATTGG ACAAGACTGG TAGGAGACTG AAAGGTAAAA TTAGTGGGTA GGGATGTAGT
  TAAGGTTATA GAGTGCTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46322462	mCV24046752	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss136405348	ENSMUSSNP218505	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29598809					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45015721 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	480 bp distal
Rr677841	regulatory region 677841	1296 bp proximal
Tssr84725	transcription start site region 84725	1539 bp downstream
Tssr84726	transcription start site region 84726	561 bp downstream
Tssr84727	transcription start site region 84727	530 bp downstream
Tssr84728	transcription start site region 84728	503 bp downstream