rs29599017 SNP Detail

Summary

• ID
  rs29599017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108685534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACT CGCTCCTGGG GCGGGGTTCC
  R
  GCGGTCGCGC ATGCGCACGC GCGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46321683	mCV25034483	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss136953277	ENSMUSSNP5953795	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss323192892	CHEV_9_108710666	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29599017					SNP	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108685534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22353	CpG island 22353	within coordinates
Ip6k2	inositol hexaphosphate kinase 2	1998 bp downstream
Nckipsd	NCK interacting protein with SH3 domain	33 bp upstream
Rr192618	regulatory region 192618	334 bp distal
Rr205762	regulatory region 205762	within coordinates
Tssr87162	transcription start site region 87162	5 bp upstream
Tssr87163	transcription start site region 87163	21 bp upstream