TACCA GAGGCTTCTT CCGGGTTTGC K ATCGCGGAGG CGGCGGCGGC TACAG K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46862574 | NES10705547 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | G | T | T | G | T | T | T | G | T | G | G | T | ||
ss320866445 | CHEV_3_108003749 | CHEVERUD | SCREENING_POP | f | SNP | G | T | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs29599046 | SNP | T | T | T | G | T | T | G | T | T | T | G | G | T | G | G | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46862574 | NES10705547 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr3:108108147 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Atxn7l2 | ataxin 7-like 2 | 1391 bp downstream | ||||||
Cpgi13693 | CpG island 13693 | within coordinates | ||||||
Cyb561d1 | cytochrome b-561 domain containing 1 | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Gm56801 | predicted gene, 56801 | within coordinates | ||||||
Rr583170 | regulatory region 583170 | 247 bp distal | ||||||
Rr583171 | regulatory region 583171 | within coordinates | ||||||
Rr583172 | regulatory region 583172 | 75 bp proximal | ||||||
Rr583173 | regulatory region 583173 | 1692 bp proximal | ||||||
Tssr1019 | transcription start site region 1019 | 905 bp downstream | ||||||
Tssr31237 | transcription start site region 31237 | 202 bp downstream | ||||||
Tssr35130 | transcription start site region 35130 | 386 bp upstream | ||||||
Tssr35131 | transcription start site region 35131 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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