rs29599049 SNP Detail

Summary

• ID
  rs29599049
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108108789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCAAAA GAAGCAATCT
  CATCATCCCT GCTTACAGGC GTAGTTGCTC CCCATCCCCT CCCTCCCACG CTGCCCCCTC
  AAAATATTCC AGATCCATGG GGCACTTTCA GCCTTTGCTG CCGCCACAGT AGAACCAGAG
  CTTTCCACAA CCCCAAGTTC TGCTACACTA TTACCTCCAA AAAGGTATGA CCCAACCTAA
  W
  GAGTTCTATA TGGGAGAAGC TTTACTCCGT TCAGGGCAAA CTCACAGAAG AGACCAGAAT
  GAGCTGTCCA GTGGGTAGGG AAATGGCTCT GTGGTTAAGA GTGCATATTC CTCTTGCTCA
  GGGGGCTCAC AGCTGACTGT AACTAGCTAC AGGGGGATCC CACACGTCTC GCCTCCGCAG
  GCATCACATG CGCATACCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46862577	NES10705549	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29599049					SNP	A	A	A	A	A	T	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46862577	NES10705549	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108108789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atxn7l2	ataxin 7-like 2			749 bp downstream
Cpgi13693	CpG island 13693			396 bp distal
Cyb561d1	cytochrome b-561 domain containing 1			Intron
				mRNA-UTR
Gm56801	predicted gene, 56801			223 bp downstream
Rr583170	regulatory region 583170			889 bp distal
Rr583171	regulatory region 583171			149 bp distal
Rr583172	regulatory region 583172			546 bp distal
Rr583173	regulatory region 583173			1050 bp proximal
Tssr1019	transcription start site region 1019			1547 bp downstream
Tssr31237	transcription start site region 31237			844 bp downstream
Tssr35130	transcription start site region 35130			1028 bp upstream
Tssr35131	transcription start site region 35131			615 bp upstream