rs29599078 SNP Detail

Summary

• ID
  rs29599078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27915094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTGGCA GCTTTGATCT
  TTCTCCTTGT CTAGAGCAAG GGGAAAGGGT AGTCTTCAAT GAGTCTGCTC TGTGTACTTT
  AGTTAAACAA CACTTTCAAC ATGTGTGAAC AAGCATGAGG GGTTATTCAG ATGGCAAAAA
  ATACAAGCCT TGAATTTTGT GATTTTTACA CCCATGTAAA AATAAATTCC CTTTCCCTAT
  Y
  GAGTTAACTG TGGACATCAT AACTACTTAA GGGGAGTGAC CAGAGACTAT AAGGATGACA
  ACTTGGCAGG AAAAAAACAA CCTCAGTAAT ATGGGCATTT TATGTAAAGT TCTGTCTCTG
  TAGGGTTTTT TAGTGCTTCC TGGCCTTATA ACAACTAGAG CTTTTAATAC ATCTTGGGGA
  TAGTGACTCA TTTAAAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46861906	NES10856585	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29599078					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861906	NES10856585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27915094 () rs orientation: forward

Symbol	Name	Function Class
Gm56777	predicted gene, 56777	1740 bp downstream
Rr574492	regulatory region 574492	1124 bp distal
Rr574493	regulatory region 574493	607 bp proximal
Rr574494	regulatory region 574494	1525 bp proximal