rs29599081 SNP Detail

Summary

• ID
  rs29599081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27915417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTTTTA GTGCTTCCTG
  GCCTTATAAC AACTAGAGCT TTTAATACAT CTTGGGGATA GTGACTCATT TAAAGAAGAC
  ACTTCCCCTC TCCAGGAGAA TAGGGGAGAG GTTGAGGGAG AAGACGAGGG TTTTGAGCCA
  TCCAGAGGAT AGGTATCCAT GACTTTCCCA GAGAGCATAT CTGTCTTTGC GTGGTTCCCA
  Y
  GAGTAATTGT GGAATAACTC CCTGGAACCC AGATTAGAGG GGCCACCTGG TACCGCTCAA
  TTGTTGGACA GTTGGTCTGG CATGATTGGG ACAGTCCTTG TAGTGTGTCA TCCATCAAGG
  CGGCTAGGAA ATGACATTAT AAAAGGGATT TATTGTCAAC TGGTTTTTTG AAATATATAT
  TAAAGTGTCA AGGAGCTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46861909	NES10856588	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29599081					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861909	NES10856588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27915417 () rs orientation: forward

Symbol	Name	Function Class
Gm56777	predicted gene, 56777	1417 bp downstream
Rr574492	regulatory region 574492	1447 bp distal
Rr574493	regulatory region 574493	284 bp proximal
Rr574494	regulatory region 574494	1202 bp proximal