rs29599210 SNP Detail

Summary

• ID
  rs29599210
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54512338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAACATTCA GAACACCAGT TATGACAAAT
  TAAAAACAAA GCACCAAAAA TCGCTACACG TTAATACCTG AGCGGAGACT GAAGGCAAAT
  ATTCACATAA TAAAACCACA TCACAATGCT GAAACACAGG TAAAACCATT CATGACACGC
  W
  ACAAATTAGA ATAAGTAGCA CTTTCCCCCC CGAATCACAA CCAGTTAAAT GTAACATAAC
  CAGTTAATTA TACCATACCA AAAATACACA GAAAAGTACA CAGAGGTGTA TTAGTGCACT
  GCACATGGCA CACAGCACTG GGACAAGCAT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45033178	mCV23016818	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		A
ss47361295	NES11081669	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	A	T	T		T	A	T	T		T	T	T	T		T
ss149125923	ENSMUSSNP2885366	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							A
ss319725503	CHEV_1_54530023	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29599210					SNP	T	T	T	A	A	T	T	T	T	A	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47361295	NES11081669	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54512338 () rs orientation: forward

Symbol	Name	Function Class
Pgap1	post-GPI attachment to proteins 1	within coordinates