rs29599276 SNP Detail

Summary

• ID
  rs29599276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108014020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAAACAG CAGCAGGGGC
  CAGGGAAGGG GCAGGCGTTG AGGGAATTGA TCAGAAAAGC CAGTAGCTAT TTTTGGTTAA
  AGAGCCTAAA ATATATGTAT AGTGATCTAT ATGAGAACTT AAGACTTTTT AAAATTGGTC
  CACTGATTGT ATGATTTCAG CGCCTTAAAT TATCCAAGAT GAAAATATTG TGACAAGATC
  Y
  ACTGACAAAC ACCTGTAATA GTTTCTGGAA CTTCATGGCA GAAGGCTTGT AGTACAAGCT
  GATAAGGAAA GGGGAGTCCA TTAGAAGAAC TCCTATCTGT CCATACTTTC ACTCAGAACA
  AAATGGAGCT GTCACCAACA AAGACTACTG TTGCCATTCT CCCAACTAAG GTCTAGTTAT
  TGTTTTTTAT TAACTAAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46862004	NES10709491	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29599276					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46862004	NES10709491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108014020 () rs orientation: forward

Symbol	Name	Function Class
Gnai3	G protein subunit alpha i3	576 bp downstream
Rr583139	regulatory region 583139	1039 bp distal