rs29600017 SNP Detail

Summary

• ID
  rs29600017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27915492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACACTTC CCCTCTCCAG
  GAGAATAGGG GAGAGGTTGA GGGAGAAGAC GAGGGTTTTG AGCCATCCAG AGGATAGGTA
  TCCATGACTT TCCCAGAGAG CATATCTGTC TTTGCGTGGT TCCCACGAGT AATTGTGGAA
  TAACTCCCTG GAACCCAGAT TAGAGGGGCC ACCTGGTACC GCTCAATTGT TGGACAGTTG
  R
  TCTGGCATGA TTGGGACAGT CCTTGTAGTG TGTCATCCAT CAAGGCGGCT AGGAAATGAC
  ATTATAAAAG GGATTTATTG TCAACTGGTT TTTTGAAATA TATATTAAAG TGTCAAGGAG
  CTGCGATACT CAGTCTTAGC TGTAGTCAGT GTTTGGTGGC TTCTGCTAAC TCCCAGGAGG
  ACCTGCGTGA GGAGAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45541120	mCV24246995	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss46861915	NES10856592	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		A	G	G	G	G	G	G	G
ss134708182	ENSMUSSNP373900	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29600017					SNP	G	G	A	A	G	G	A	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861915	NES10856592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27915492 () rs orientation: forward

Symbol	Name	Function Class
Gm56777	predicted gene, 56777	1342 bp downstream
Rr574492	regulatory region 574492	1522 bp distal
Rr574493	regulatory region 574493	209 bp proximal
Rr574494	regulatory region 574494	1127 bp proximal