rs29600223 SNP Detail

Summary

• ID
  rs29600223
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19011486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCATCA AGTACTTCTA
  TGTCACTTCA GAGAAGGAAT GAAACCTTGG GTCTCTCTTT ATATCTGGCT GTACACTCAA
  CACTTGTTTA GTGACAGACA AAGGAATTCA AAGAGCTTCA TGAGTGTAGA GATGAAATAA
  AGCACTGTCC ACTTGTTAAC TATGAGTTTA ATTCAATAGA CCCATGATGT GTAGAGCTAT
  S
  TACCACACTT CAAAAGTTGT CAAATACATG AACTATAAGG TCCTTTTTAT AAGGCCATTG
  GCTTGGGCAG GGGATGGAAT GAACTGGTAG AAAACTAAAA CTCATACAGA ACAGACAGTA
  CAATCTGCTT TATTTTCATT AGATTCAGCA CTAGGTGACA AAAACTCATT ACATTATGAC
  AATTGACTAT TAAACAATTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss46863161	NES10960702	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs29600223					SNP	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863161	NES10960702	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19011486 () rs orientation: forward

Symbol	Name	Function Class
Gm26652	predicted gene, 26652	within coordinates
Mir221	microRNA 221	1047 bp downstream
Mir222	microRNA 222	1646 bp downstream
Tssr163041	transcription start site region 163041	1051 bp downstream
Tssr163042	transcription start site region 163042	1642 bp downstream