rs29600864 SNP Detail

Summary

• ID
  rs29600864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45925889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCTGCTT ATTGGCAACC
  TGAAAGTTCC TTTCCTTGCC TCTCTCTGTC AAAGACTACA AGGGGCCCTT CTTCCGAGGG
  TGGCGGCGGG CAGAGTGATT GGTCAGTTTC ACTTCCTCTG GTGGGACCCC TTCAAGCCTC
  AAGTCTTCAG AGCCCTGTGA CAGACTCAAG TGCGCCCTCC TGTTGCAGTC CCTCCCTCAG
  R
  TCCGCAGCTG GAGCCGAAGC CGGCATCTCC TTACCCCCTA CAGTGTGTTT ACTGTTGGCC
  TAGTCAAACT TGTGTTTACA AACAGAATGC CTCTGTCCCT TGTTTTCTCT CCCCTGTCTG
  CTTCTGTGGT TATTTTGCTC TGACCTCTGG GAAATGGACT CCACAAACAT AATTGGTTGT
  CTGGCTACGT TCTCTATGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46322780	mCV24050251	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			G		G
ss47695234	NES11319074	PERLEGEN	MM_PANEL2	f	SNP			G	G	G		A	G	G	A	A	G	G	G
ss136421744	ENSMUSSNP6693367	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29600864					SNP	A	A	G	G	G	G	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695234	NES11319074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45925889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21700	CpG island 21700	986 bp distal
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	1901 bp upstream
Rr401349	regulatory region 401349	1788 bp downstream
Rr678027	regulatory region 678027	1761 bp distal
Rr678028	regulatory region 678028	1811 bp distal
Rr678029	regulatory region 678029	11 bp distal
Rr678030	regulatory region 678030	1821 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84822	transcription start site region 84822	1770 bp downstream
Tssr84823	transcription start site region 84823	1731 bp downstream
Tssr89308	transcription start site region 89308	1898 bp upstream