rs29601003 SNP Detail

Summary

• ID
  rs29601003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54513782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACTGCA GGGCATTGCT
  TTGTCATTTT AAGGCACAGT CTGTTTTATC CCAAATAAGT TCAAGGTCAC AGTGATGGGG
  TATACTCAGT TTTGGTTTAT CTTGGGCATG TTGCTACGTT TATAGTTCCT CCTACGTTTA
  AAAAACCACA GCATCACTTG AAAAGGATAC ACGTCAGTGC CTATTTTCAA AAAAATATTC
  R
  AAAAAAGTAT GCAGCACAAC TTCCTAATTT ATACACAATA AAAATGAAGA TTTCTTTCCC
  AACCACACAG CAGGGGACGG AGATCTGCAC AAACCTCTGC CTTCATAAGC ACAGAGCCTG
  CTTATGTTAA GGGACAGGCA TCTCCCGCCT AAGCTAAGAT CACTGCACAC AGAAGACAAA
  CTCCTTCCAG AGGACAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47361319	NES11081680	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29601003					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47361319	NES11081680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54513782 () rs orientation: forward

Symbol	Name	Function Class
Pgap1	post-GPI attachment to proteins 1	within coordinates