rs29601066 SNP Detail

Summary

• ID
  rs29601066
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19012038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTACTG TCTAAAATTA
  TTTCTAAGTT TCCATTTATT TACCAAAAGA ATAGAAAACC CACATTGTAA AACTTGTGTT
  TCTTAGAAGC AATTTCCATT CCCTTCTTCT CATCATGGAA AACCATTCTT GAGTTCTTTA
  TAAGCTTGTC ATTCCATCAC ACAGCTGCTG CTCTGTTTTC CTAAGTGATG GTCATCAGTA
  S
  TGGACAGTCA AATTCTAGGG TATGCTTTCA GCGAACAAAT GGTGTAGTGA GATGTTGCAA
  CATAATAAAA TGTTCAGAGA CTATGCAGAC TGGAAAGTTC TTCATATAAG TTTTGGGACA
  ATGACAGAGG AGGGACAGAA ACAGACCAGG CTCCTGCAGG TGGAAGAGAA GCCAAAGTGA
  GGACAAATGC TGAGGTCGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46863164	NES10960703	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29601066					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863164	NES10960703	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19012038 () rs orientation: forward

Symbol	Name	Function Class
Gm26652	predicted gene, 26652	within coordinates
Mir221	microRNA 221	495 bp downstream
Mir222	microRNA 222	1094 bp downstream
Tssr163041	transcription start site region 163041	499 bp downstream
Tssr163042	transcription start site region 163042	1090 bp downstream