rs29602800 SNP Detail

Summary

• ID
  rs29602800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108282203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGGGTA AGCCCAAACC
  TCAAACCACC TGGACTCACA ATGGCTGTGC CCTGGACAGC AGCCGTGTCA GCGTGCGGAA
  TGGGGAGCAT GACTCTATTC TTTTCATCAG AGAGGCCCAA CGCACTGACT CAGGATGCTA
  CCAACTCTGT GTGCAGCTCG GTGGGCTGCA GGCCACTGCC ACCATCAATA TCCTGGTGAT
  Y
  GGTAAGGCTG GGGGATAGAA GGAAGAGGTA GTCTCTAGCA TCTCTGGGCT GAATAGGAGC
  TATCCCAGAG AGTCTCAGAC ACGGTGGTAG GTGATGGGAA GGATCCAAGC AGAGAAGAGG
  GTCGAGGGTA TTCTGTAGTG AGGTTGCCAC ATGTGGGATG CCCAGTGCCT ACTGCCACCC
  ACGGCTTTGC TCTTCCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46864338	NES10698353	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29602800					SNP	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864338	NES10698353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108282203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mybphl	myosin binding protein H-like			Coding-Synonymous
				Splice-Site
Rr583217	regulatory region 583217			1745 bp distal
Rr583218	regulatory region 583218			1921 bp proximal