rs29602940 SNP Detail

Summary

• ID
  rs29602940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19013756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGCCTC TCCTCCCATT
  GATGGCCAAG TAGGCCATCC TGTGCTACAT ATGCAACTAG AGACACAGCT CTTGGGGGTG
  GGGGGTACTG GTTAGTTCAT ATCATTGTTC CTCCTATAGA GTTGCTGACC CCTTTAGATC
  CTTGGGTATT TTCTCTAGCT CCTTCATTAG GGGCCCTGTG TTCCATCCAA TAGATGACAA
  Y
  ACAAACAATT ATTAAAAGGT AGCATTTATG GAACTATTCT AAGTAGTACT TCATTAGTTT
  GTCTGTTCTA AGCTGTCCCT CTACAAAACA ATACAGGTCT AAGTCACTAG CTAGGTAAGC
  TCCTTGTTGA TCAAGTCATT AATTTTTCCT AGAAATACTT AAAAATACTC ACTGAGACAC
  TTTTCTGAAT CTTTTCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46863188	NES10960630	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29602940					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863188	NES10960630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19013756 () rs orientation: forward

Symbol	Name	Function Class
Gm26652	predicted gene, 26652	within coordinates
Mir221	microRNA 221	1129 bp upstream
Mir222	microRNA 222	546 bp upstream
Tssr5597	transcription start site region 5597	1518 bp downstream
Tssr163041	transcription start site region 163041	1205 bp upstream
Tssr163042	transcription start site region 163042	613 bp upstream
Tssr163043	transcription start site region 163043	1481 bp downstream
Tssr163044	transcription start site region 163044	1567 bp downstream