rs29602943 SNP Detail

Summary

• ID
  rs29602943
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19014029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCCTCT ACAAAACAAT
  ACAGGTCTAA GTCACTAGCT AGGTAAGCTC CTTGTTGATC AAGTCATTAA TTTTTCCTAG
  AAATACTTAA AAATACTCAC TGAGACACTT TTCTGAATCT TTTCCCAGGC CCCTGACATT
  TGGGACTGAG AATCAGATTA CAAAAAGGGT AGAGAAAAAT AAGAAATTAA TCCAGCAGAA
  W
  CGAGTCATTC CATAACATAA TAAATAGTTG AGAGTAATTG TACTGTTTTG AAGGTAGTTG
  AGAAATGTGT GTCTGAAGGC TTGATATTCA TGCAGTGTGC AAGAAGCATG CATACACATA
  TCTGGGGGAG AGAAAGGACC CTAGGGGGTT GAACGAGGCA ACTGTCCAAA ACCAAAGCAG
  GAAAATGTCT GATTTGAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46863191	NES10960631	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29602943					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863191	NES10960631	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19014029 () rs orientation: forward

Symbol	Name	Function Class
Gm26652	predicted gene, 26652	within coordinates
Mir221	microRNA 221	1402 bp upstream
Mir222	microRNA 222	819 bp upstream
Tssr5597	transcription start site region 5597	1245 bp downstream
Tssr163041	transcription start site region 163041	1478 bp upstream
Tssr163042	transcription start site region 163042	886 bp upstream
Tssr163043	transcription start site region 163043	1208 bp downstream
Tssr163044	transcription start site region 163044	1294 bp downstream