rs29603545 SNP Detail

Summary

• ID
  rs29603545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28039268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGCTTG TTGCTGTTTT
  TATTCAAGTA GCTCCCTAGA ATAAGAGGTC ACCCTAAAGT ACATATGCCC GTAAAATTGG
  AGTGTGATGT GCAAGACATG AAAGTAGTGT TAATAATAAT AATAAAGAAA TGAAGTCAAT
  AAAATTAAGA GAATAGCTCC CTCAATTTCC CGGAGTTAAA GAGCTCAGTT CATTTGCCCC
  R
  GAGGCATCTG GCAGGAGACC ACTCTACAAG ACAGGCTCCG TTTGACACTG TTTCAAAGTG
  TGTACTTCTT GGGAACTGGC TTCTCTTTGC CTTGTATAGG TAAGGTACAT CAGTTCAAAT
  GGATAAACGA ATATTTTAAA ATATGCTAAT ATATGCTATT GTGTGTCTAC TAATGGCTAG
  TCTCTTCTCT TTTTGACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46863283	NES10847926	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29603545					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863283	NES10847926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28039268 () rs orientation: forward

Symbol	Name	Function Class
Pld1	phospholipase D1	Intron
Rr574517	regulatory region 574517	936 bp distal
Rr574518	regulatory region 574518	281 bp distal
Rr574519	regulatory region 574519	20 bp proximal
Tssr28637	transcription start site region 28637	919 bp downstream
Tssr28638	transcription start site region 28638	829 bp downstream
Tssr28639	transcription start site region 28639	480 bp downstream