rs29603548 SNP Detail

Summary

• ID
  rs29603548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28039429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATTTCCC GGAGTTAAAG
  AGCTCAGTTC ATTTGCCCCG GAGGCATCTG GCAGGAGACC ACTCTACAAG ACAGGCTCCG
  TTTGACACTG TTTCAAAGTG TGTACTTCTT GGGAACTGGC TTCTCTTTGC CTTGTATAGG
  TAAGGTACAT CAGTTCAAAT GGATAAACGA ATATTTTAAA ATATGCTAAT ATATGCTATT
  R
  TGTGTCTACT AATGGCTAGT CTCTTCTCTT TTTGACCCAA TGGGACAGTC AGTGCATCAG
  CGTCTGTTTT ATCATCTTTT TCATTTAAGT ATTTTTAAAG ATGGAGGAAA AATGGAGACA
  GAAGTATTCG TGTGTTCATG TGTTTGTGTG CATGTGTGTG TGTGCGCGTG TGCGTGTGTG
  CAAGCACATA GTCTTTAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46863286	NES10847927	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29603548					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863286	NES10847927	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28039429 () rs orientation: forward

Symbol	Name	Function Class
Pld1	phospholipase D1	Intron
Rr574517	regulatory region 574517	1097 bp distal
Rr574518	regulatory region 574518	442 bp distal
Rr574519	regulatory region 574519	within coordinates
Tssr28637	transcription start site region 28637	1080 bp downstream
Tssr28638	transcription start site region 28638	990 bp downstream
Tssr28639	transcription start site region 28639	641 bp downstream