rs29603796 SNP Detail

Summary

• ID
  rs29603796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54622222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACCCAC TTACACATAT
  GCACCCACGT GACTATACAA CCCCAATATG AAAATACTAT AAAGGAAAAC ATTTGCCTAT
  TAAGGAAGAC TAGTGCTTGT CTCTACAATG AAAAACCATT TTCCTGGTAC CAGAGATAAA
  GGACAAACCA AGAAGTTCAC TGACACAAAG GCTGTCATCT TTCTGTCAAA GTCTGGTTAT
  Y
  GCATAAAATT GATATTCATA AATCTTAATT TAATGAAAAA CGATGTGAAG TCCAAAGGTA
  TCAGACAGCT AGTGAGATTA TTTCTCAGGG CTAGTGAAGA AGGGAAGGAT ATTTTGGTGA
  CACCCACACT TTCTATGGGT AATTGATTTT TGTTGGTATT CCATCTGGAC TCAACCCCTC
  TTAGACCTAG TGGGGAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47362759	NES11076468	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29603796					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47362759	NES11076468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54622222 () rs orientation: forward

Symbol	Name	Function Class
Rr33896	regulatory region 33896	1179 bp proximal
Rr371299	regulatory region 371299	1951 bp upstream
Tssr86	transcription start site region 86	808 bp upstream