rs29603802 SNP Detail

Summary

• ID
  rs29603802
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54624345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAAGAGA ACAGCAGGTG TTGTATCCTG AAGAGGTAAC
  AAGTTGTCTC AGCTGAGGAA AGAAAAGCTA AGAGGAGCAG ACCTCAACAG TTAGAGACAC
  S
  GTGTCTGAAA GGAAGAAAAG AAAGAAGTTA AGCCTAAAGA ACAAAGCAAA AATAAGTGCA
  GAGCCACAGG ACCTGGGGGG CTGGCCTAGT GCTGATAGGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47362765	NES11076435	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29603802					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47362765	NES11076435	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54624345 () rs orientation: forward

Symbol	Name	Function Class
Rr33896	regulatory region 33896	within coordinates
Rr371299	regulatory region 371299	within coordinates
Tssr86	transcription start site region 86	1306 bp downstream
Tssr6704	transcription start site region 6704	547 bp upstream
Tssr11691	transcription start site region 11691	4 bp downstream
Tssr11692	transcription start site region 11692	265 bp downstream