rs29603816 SNP Detail

Summary

• ID
  rs29603816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19014092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTAATTT TTCCTAGAAA
  TACTTAAAAA TACTCACTGA GACACTTTTC TGAATCTTTT CCCAGGCCCC TGACATTTGG
  GACTGAGAAT CAGATTACAA AAAGGGTAGA GAAAAATAAG AAATTAATCC AGCAGAAACG
  AGTCATTCCA TAACATAATA AATAGTTGAG AGTAATTGTA CTGTTTTGAA GGTAGTTGAG
  R
  AATGTGTGTC TGAAGGCTTG ATATTCATGC AGTGTGCAAG AAGCATGCAT ACACATATCT
  GGGGGAGAGA AAGGACCCTA GGGGGTTGAA CGAGGCAACT GTCCAAAACC AAAGCAGGAA
  AATGTCTGAT TTGAAATAAG CGACTTGATC TCAACATTTC ACTTCCATGG GCAATGGCTG
  CCCACCCCCT ATATTTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46863194	NES10960632	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29603816					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863194	NES10960632	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19014092 () rs orientation: forward

Symbol	Name	Function Class
Gm26652	predicted gene, 26652	within coordinates
Mir221	microRNA 221	1465 bp upstream
Mir222	microRNA 222	882 bp upstream
Tssr5597	transcription start site region 5597	1182 bp downstream
Tssr163041	transcription start site region 163041	1541 bp upstream
Tssr163042	transcription start site region 163042	949 bp upstream
Tssr163043	transcription start site region 163043	1145 bp downstream
Tssr163044	transcription start site region 163044	1231 bp downstream