rs29603984 SNP Detail

Summary

• ID
  rs29603984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29198643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGCTAC TTTCTCTCTC
  TGAATCCCAT TCTCCCAGCC ATAATAAAGG ACTCTGCGAT ACTGACTTGT ATGGTAGCTG
  AGGCGATGAC ACCCTAGCAG GCACTGGTGG AGAGTAATAA ACAATCGTAT TAAAAGAGGT
  CCCCCCCCCC CACTCGCTCT TCTGGGCAGC CACAGCTAGC TTTATTGCGA GATTATTTTG
  Y
  TCTCTGTGCT CTTCCTGTCC TTCAGAAGCC AAATTTTCTA TGGACGTCGG CAACCAGGGA
  ATGGTTGTCA AGGGCCGGGC TTTTAGAAAC GCTGTCTGTT GCCTAGGAAA CGTCACCACT
  CTCGTTCTCT GGGCTCCCAG CAGTCGATGG GTTCTGGCGC CATCTGCTGG ATTCAGAGCC
  ACTACACTGC TTCTAAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47862046	NES11680825	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29603984					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862046	NES11680825	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29198643 () rs orientation: forward

Symbol	Name	Function Class
Gm67825	predicted gene, 67825	136 bp downstream
Gm68017	predicted gene, 68017	115 bp upstream
Impdh1	inosine monophosphate dehydrogenase 1	1792 bp downstream
Rr627510	regulatory region 627510	within coordinates
Rr627511	regulatory region 627511	126 bp proximal
Rr627512	regulatory region 627512	154 bp proximal
Rr627513	regulatory region 627513	559 bp proximal