rs29603990 SNP Detail

Summary

• ID
  rs29603990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29199044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGACCCG GGAGTCCCAT
  CCCCGAGGGA GGAAAGGCTC CTCCTATTCT ACTCTACCCC ACCTCTCCAT AGAAAAGTTC
  TTTACTCCTT TGTCCCCAGA CCTTTCTCAG GGACCAGAGG CATGCAAAGG ACTTGGCCTC
  TGTGGACTAC AGGGAGGGTG GAAGTCATGT CCTTCCTAAC AGCGAGAGAA AGCGGACCCA
  Y
  GGACCCACGG TATGGGGTCT GGAGGAAGTC CCTCCCCTTA ATTGATTTTC TGTAGTGCGG
  AATCCGCAGT GCAGACTTGC ATTTTGCTTT TCACCAGCCT GCGTCTACTA GGAGCGTGCA
  GCCAGAAGAA CATGCTAGGG TTGGAGGTGG GAGGCAGGCG GACGGTTGAG GTCACAGCAA
  GGTCCTTCTT CTCTGTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47862052	NES11680828	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29603990					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862052	NES11680828	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29199044 () rs orientation: forward

Symbol	Name	Function Class
Gm67825	predicted gene, 67825	537 bp downstream
Gm68017	predicted gene, 68017	within coordinates
Impdh1	inosine monophosphate dehydrogenase 1	1391 bp downstream
Rr627510	regulatory region 627510	276 bp distal
Rr627511	regulatory region 627511	within coordinates
Rr627512	regulatory region 627512	226 bp distal
Rr627513	regulatory region 627513	158 bp proximal