rs29604904 SNP Detail

Summary

• ID
  rs29604904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29199523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGTGGCC AGATGAGCCG
  CTGCAGCTTA GTTCATTCTG CTTCACCCCT AAGAGAAAGC AGCAGACACC CGAGGCGGGG
  ACATGGCTTC CAGGTGATTG CTGCCTGGGA TGCCCCCAGC CCTCTCCCTA CCTCGAGAGA
  AACCTGTGTG AAAGGTGAAG GTCAAAGTGG ATTATCTGAG ATTTGGGGTC AGGAGACAGA
  R
  AGCTGTTTGC CCCCAATGAA GGTGCTTCTC TTTCCCTGTC ATTATCACTA GTAAGGAAAC
  AGGTCTGAAG TGAACGAGAG TCTGGCTTCT ATCTGTCCTG GCCAAACACT GTCTTTTCTG
  TGCAGATGCT TCTGCCCACC TCTAGTTGAG CTGGAGATAA CAGTGCCAGA CAGAGGCTCA
  GAAGCTAAGA GGACAGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47862056	NES11680830	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29604904					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862056	NES11680830	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29199523 () rs orientation: forward

Symbol	Name	Function Class
Gm67825	predicted gene, 67825	1016 bp downstream
Gm68017	predicted gene, 68017	185 bp downstream
Impdh1	inosine monophosphate dehydrogenase 1	912 bp downstream
Rr627510	regulatory region 627510	755 bp distal
Rr627511	regulatory region 627511	within coordinates
Rr627512	regulatory region 627512	705 bp distal
Rr627513	regulatory region 627513	300 bp distal
Tssr60073	transcription start site region 60073	1633 bp downstream